STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yiaO_1Extracytoplasmic solute receptor protein yiaO. (347 aa)    
Predicted Functional Partners:
yiaM_1
2%2C3-diketo-L-gulonate TRAP transporter small permease protein yiaM.
 
 
 0.983
siaT_1
Neu5Ac permease.
 
 0.980
yiaM_2
2%2C3-diketo-L-gulonate TRAP transporter small permease protein yiaM.
 
 
 0.930
yiaM_3
2%2C3-diketo-L-gulonate TRAP transporter small permease protein yiaM.
 
 
 0.930
siaT_2
Neu5Ac permease.
 
 0.920
siaT_3
Neu5Ac permease.
 
 0.920
yicI
Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family.
 
     0.691
gltT
Glutamate-aspartate carrier protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
    
 0.498
arcB
Aerobic respiration control sensor protein ArcB.
     
 0.458
CUQ73963.1
Predicted metal-dependent hydrolase of the TIM-barrel fold.
    
  0.413
Your Current Organism:
Lachnospira pectinoschiza
NCBI taxonomy Id: 28052
Other names: ATCC 49827, L. pectinoschiza, strain 150-1
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