STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcaJ_2Putative colanic biosynthesis UDP-glucose lipid carrier transferase. (475 aa)    
Predicted Functional Partners:
tagA
Putative N-acetylmannosaminyltransferase.
  
 0.980
cpsD_3
Tyrosine-protein kinase CpsD.
 
 
 0.872
cpsD_2
Tyrosine-protein kinase CpsD.
 
 
 0.871
CUQ74445.1
Rhamnosyltransferase.
 
 
 0.805
cap8A_2
Capsular polysaccharide type 8 biosynthesis protein cap8A.
 
  
 0.709
cap8A_1
Capsular polysaccharide type 8 biosynthesis protein cap8A.
 
  
 0.702
manC1
Mannose-1-phosphate guanylyltransferase 1.
  
 
 0.688
capD
UDP-glucose 4-epimerase.
 
 
 0.661
CUQ74450.1
Polysaccharide biosynthesis protein.
  
  
 0.617
CUQ74419.1
Polysaccharide biosynthesis protein.
 
  
 0.595
Your Current Organism:
Lachnospira pectinoschiza
NCBI taxonomy Id: 28052
Other names: ATCC 49827, L. pectinoschiza, strain 150-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.