STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pemA_2Pectinesterase A precursor. (317 aa)    
Predicted Functional Partners:
rhgT_1
Rhamnogalacturonan acetylesterase rhgT.
  
 0.981
pehX_1
Exo-poly-alpha-D-galacturonosidase precursor; Belongs to the glycosyl hydrolase 28 family.
  
 0.979
rhgT_2
Rhamnogalacturonan acetylesterase rhgT.
  
 0.978
pelX
Pectate disaccharide-lyase precursor.
  
 0.967
pehX_2
Exo-poly-alpha-D-galacturonosidase precursor; Belongs to the glycosyl hydrolase 28 family.
  
 0.963
yteR
Unsaturated rhamnogalacturonyl hydrolase YteR.
  
  0.899
CUQ74090.1
Uncharacterised protein.
  
  
  0.796
xynB_2
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.786
xynB_1
Beta-xylosidase.
 
     0.768
xynB_3
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.755
Your Current Organism:
Lachnospira pectinoschiza
NCBI taxonomy Id: 28052
Other names: ATCC 49827, L. pectinoschiza, strain 150-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.