STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytBModifier protein of major autolysin. (766 aa)    
Predicted Functional Partners:
cwlC
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
 
 
 0.610
CUQ73966.1
Sporulation protein YabP.
 
   
 0.584
CUQ74575.1
Stage II sporulation protein P.
  
  
 0.584
spoIVA
Stage IV sporulation protein A.
   
  
 0.552
lytC_1
N-acetylmuramoyl-L-alanine amidase LytC precursor.
 
 
 0.534
CUQ78407.1
LysM domain/BON superfamily protein.
  
  
 0.472
CUQ75690.1
SpoIIIAH-like protein.
  
  
 0.441
CUQ76823.1
Type VII secretion-associated serine protease mycosin; Belongs to the peptidase S8 family.
 
   
 0.427
CUQ73967.1
Spore cortex biosynthesis protein YabQ.
 
  
 0.425
birA
Bifunctional protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.418
Your Current Organism:
Lachnospira pectinoschiza
NCBI taxonomy Id: 28052
Other names: ATCC 49827, L. pectinoschiza, strain 150-1
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