Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cca | fruA | ERS852451_02164 | ERS852451_01509 | CCA-adding enzyme. | EIIABC-Fru. | 0.513 |
cca | pnp | ERS852451_02164 | ERS852451_00909 | CCA-adding enzyme. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.840 |
cca | rny | ERS852451_02164 | ERS852451_01193 | CCA-adding enzyme. | Ribonuclease Y; Endoribonuclease that initiates mRNA decay. | 0.705 |
cheR | ribBA | ERS852451_00944 | ERS852451_01649 | Chemotaxis protein methyltransferase. | Riboflavin biosynthesis protein ribBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.473 |
cheR | rny | ERS852451_00944 | ERS852451_01193 | Chemotaxis protein methyltransferase. | Ribonuclease Y; Endoribonuclease that initiates mRNA decay. | 0.791 |
cheR | tpl | ERS852451_00944 | ERS852451_02102 | Chemotaxis protein methyltransferase. | PSP1 C-terminal conserved region. | 0.650 |
cshA_1 | pnp | ERS852451_00440 | ERS852451_00909 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.947 |
cshA_1 | rny | ERS852451_00440 | ERS852451_01193 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | Ribonuclease Y; Endoribonuclease that initiates mRNA decay. | 0.718 |
cshA_1 | rpsO | ERS852451_00440 | ERS852451_00908 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | BS18; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.725 |
cshA_2 | pnp | ERS852451_01071 | ERS852451_00909 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.947 |
cshA_2 | rny | ERS852451_01071 | ERS852451_01193 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | Ribonuclease Y; Endoribonuclease that initiates mRNA decay. | 0.718 |
cshA_2 | rpsO | ERS852451_01071 | ERS852451_00908 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | BS18; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.725 |
fruA | cca | ERS852451_01509 | ERS852451_02164 | EIIABC-Fru. | CCA-adding enzyme. | 0.513 |
fruA | rny | ERS852451_01509 | ERS852451_01193 | EIIABC-Fru. | Ribonuclease Y; Endoribonuclease that initiates mRNA decay. | 0.744 |
pnp | cca | ERS852451_00909 | ERS852451_02164 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | CCA-adding enzyme. | 0.840 |
pnp | cshA_1 | ERS852451_00909 | ERS852451_00440 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | 0.947 |
pnp | cshA_2 | ERS852451_00909 | ERS852451_01071 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | 0.947 |
pnp | rnjA | ERS852451_00909 | ERS852451_00793 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Ribonuclease J 1; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.527 |
pnp | rny | ERS852451_00909 | ERS852451_01193 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Ribonuclease Y; Endoribonuclease that initiates mRNA decay. | 0.875 |
pnp | rpsO | ERS852451_00909 | ERS852451_00908 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | BS18; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.870 |
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