STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxSRegulatory protein soxS. (264 aa)    
Predicted Functional Partners:
porA
Pyruvate synthase subunit porA.
     
 0.904
feaR
Transcriptional activator feaR.
  
   0.795
rhaR_2
L-rhamnose operon transcriptional activator rhaR.
  
     0.772
adaA_3
Methylphosphotriester-DNA--protein-cysteine S-methyltransferase.
  
     0.753
yihP
Inner membrane symporter yihP.
 
     0.623
ribBA
Riboflavin biosynthesis protein ribBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.620
marR
Multiple antibiotic resistance protein marR.
   
  
 0.618
acrR
Potential acrAB operon repressor.
      
 0.614
lacM
Beta-galactosidase small subunit.
    
  0.610
lacL
Beta-galactosidase large subunit.
    
  0.610
Your Current Organism:
Lachnospira pectinoschiza
NCBI taxonomy Id: 28052
Other names: ATCC 49827, L. pectinoschiza, strain 150-1
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