STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yiaM_22%2C3-diketo-L-gulonate TRAP transporter small permease protein yiaM. (161 aa)    
Predicted Functional Partners:
siaT_2
Neu5Ac permease.
 
 0.988
yiaO_2
Extracytoplasmic solute receptor protein yiaO.
 
 
 0.983
siaT_1
Neu5Ac permease.
 
 0.951
siaT_3
Neu5Ac permease.
 
 0.950
yiaO_1
Extracytoplasmic solute receptor protein yiaO.
 
 
 0.930
CUQ77404.1
TRAP-type mannitol/chloroaromatic compound transport system%2C periplasmic component.
 
 
 0.913
dctP
C4-dicarboxylate-binding periplasmic protein precursor.
 
 
 0.907
arcB
Aerobic respiration control sensor protein ArcB.
     
 0.467
CUQ76247.1
Uncharacterised protein.
       0.402
Your Current Organism:
Lachnospira pectinoschiza
NCBI taxonomy Id: 28052
Other names: ATCC 49827, L. pectinoschiza, strain 150-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.