STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUQ76379.1D-alanyl-D-alanine carboxypeptidase. (314 aa)    
Predicted Functional Partners:
dacC
D-alanyl-D-alanine carboxypeptidase dacC precursor; Belongs to the peptidase S11 family.
     
 0.898
dacB_2
D-alanyl-D-alanine carboxypeptidase dacB precursor.
     
 0.898
ddlB
D-alanine--D-alanine ligase B; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.858
dacB_1
D-alanyl-D-alanine carboxypeptidase dacB precursor; Belongs to the peptidase S11 family.
     
 0.805
dacB_3
D-alanyl-D-alanine carboxypeptidase dacB precursor; Belongs to the peptidase S11 family.
     
 0.805
pbpD
Penicillin-binding protein 4 precursor.
     
 0.804
mrcA
Penicillin-binding protein 1A.
     
 0.804
CUQ74358.1
L%2CD-carboxypeptidase A.
     
 0.797
rhgT_2
Rhamnogalacturonan acetylesterase rhgT.
       0.732
pbpA_1
Penicillin-binding protein A.
     
 0.727
Your Current Organism:
Lachnospira pectinoschiza
NCBI taxonomy Id: 28052
Other names: ATCC 49827, L. pectinoschiza, strain 150-1
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