STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUQ77367.1Putative protein-S-isoprenylcysteine methyltransferase. (117 aa)    
Predicted Functional Partners:
CUQ74281.1
DUF218 domain.
 
      0.868
metH_1
Methionine synthase.
    
  0.795
metH_2
Methionine synthase.
    
  0.794
CUQ77365.1
Predicted integral membrane protein.
       0.737
norM_2
Na(+)/drug antiporter.
  
    0.559
CUQ77364.1
Uncharacterised protein.
 
     0.506
rpsM
BS14; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
   
    0.472
cgkA
Kappa-carrageenase precursor.
 
  
  0.470
CUQ77370.1
Uncharacterised protein.
       0.468
ttcA
tRNA 2-thiocytidine biosynthesis protein TtcA.
    
 0.446
Your Current Organism:
Lachnospira pectinoschiza
NCBI taxonomy Id: 28052
Other names: ATCC 49827, L. pectinoschiza, strain 150-1
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