STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nikANickel-binding periplasmic protein precursor. (557 aa)    
Predicted Functional Partners:
gsiD
Glutathione transport system permease protein gsiD.
 0.999
nikB
Nickel transport system permease protein nikB.
 0.998
gsiA_2
Glutathione import ATP-binding protein GsiA.
 
 
 0.996
gsiA_1
Glutathione import ATP-binding protein GsiA.
 
 
 0.974
porA
Pyruvate synthase subunit porA.
  
  
 0.897
rebM_1
Rebeccamycin O-methyltransferase.
 
    0.861
macB_2
Macrolide export ATP-binding/permease protein MacB.
     
 0.718
secDF
Bifunctional preprotein translocase subunit SecD/SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
    
 0.621
artM_4
Arginine transport ATP-binding protein ArtM.
    
 0.608
artQ_1
Arginine transport system permease protein ArtQ.
  
 
 0.591
Your Current Organism:
Lachnospira pectinoschiza
NCBI taxonomy Id: 28052
Other names: ATCC 49827, L. pectinoschiza, strain 150-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.