STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmr_7Cyclic di-GMP phosphodiesterase Gmr. (451 aa)    
Predicted Functional Partners:
cph2_2
Bacteriophytochrome cph2.
 0.999
gmr_5
Cyclic di-GMP phosphodiesterase Gmr.
 0.998
cph2_5
Bacteriophytochrome cph2.
 0.998
cph2_4
Bacteriophytochrome cph2.
 
 0.997
rpfC
Sensory/regulatory protein RpfC.
 
 0.995
cph2_3
Bacteriophytochrome cph2.
 
 0.995
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
0.994
pleD
Stalked cell differentiation-controlling protein.
 0.994
cph2_1
Bacteriophytochrome cph2.
 
0.992
luxQ_1
Autoinducer 2 sensor kinase/phosphatase luxQ.
 
 0.992
Your Current Organism:
Lachnospira pectinoschiza
NCBI taxonomy Id: 28052
Other names: ATCC 49827, L. pectinoschiza, strain 150-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.