STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUQ78278.1Transcriptional regulator%2C y4mF family. (94 aa)    
Predicted Functional Partners:
CUQ78280.1
Uncharacterized protein related to capsule biosynthesis enzymes.
 
 
 0.976
ygaD
Competence damage-inducible protein A; Belongs to the CinA family.
    
 0.655
cheY_1
Chemotaxis protein CheY.
    
  0.591
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.553
porA
Pyruvate synthase subunit porA.
  
 
  0.516
CUQ74086.1
Uncharacterized membrane protein.
  
     0.512
CUQ78287.1
Protein of uncharacterised function (DUF2500).
       0.496
CUQ76974.1
Uncharacterized protein conserved in bacteria.
    
 
 0.457
CUQ77969.1
Uncharacterized protein conserved in bacteria.
    
 
 0.457
atpC_2
F-ATPase epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.450
Your Current Organism:
Lachnospira pectinoschiza
NCBI taxonomy Id: 28052
Other names: ATCC 49827, L. pectinoschiza, strain 150-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.