STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytR_7Sensory transduction protein lytR. (242 aa)    
Predicted Functional Partners:
CUQ76784.1
Heavy metal sensor kinase.
 
 
 0.906
CUQ76270.1
Uncharacterised protein.
 
  
  0.841
CUQ74030.1
Sensory histidine kinase DcuS.
 
  
  0.840
CUQ75931.1
Sensory histidine kinase DcuS.
 
  
  0.823
CUQ75272.1
Sensory histidine kinase DcuS.
 
  
  0.820
CUQ77106.1
Sensory histidine kinase DcuS.
 
  
  0.819
CUQ78414.1
Predicted signal transduction protein with a C-terminal ATPase domain.
 
  
  0.816
CUQ75157.1
Predicted signal transduction protein with a C-terminal ATPase domain.
 
  
  0.799
ypdA_2
Inner membrane protein ypdA.
 
 
 0.795
lytR_4
Sensory transduction protein lytR.
  
     0.774
Your Current Organism:
Lachnospira pectinoschiza
NCBI taxonomy Id: 28052
Other names: ATCC 49827, L. pectinoschiza, strain 150-1
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