STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOV08847.1Desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)    
Predicted Functional Partners:
OOV05668.1
Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.973
OOV05667.1
Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.868
OOV06917.1
Cell shape determination protein CcmA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.656
OOV06302.1
Heme biosynthesis protein HemY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.598
OOV05669.1
Penicillin acylase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.592
OOV06077.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.549
OOV06614.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.546
OOV06155.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.530
OOV06670.1
Zinc chelation protein SecC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.528
OOV06303.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.506
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.