Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOV05715.1Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)    
Predicted Functional Partners:
OOV05716.1
5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.627
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.554
OOV05713.1
Laccase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.527
OOV05714.1
Ribosomal protein S12 methylthiotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
OOV08263.1
DNA starvation/stationary phase protection protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.
   
 
 0.517
OOV08442.1
Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.508
OOV08854.1
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.465
OOV07448.1
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.435
OOV07519.1
Nitrogenase cofactor biosynthesis protein NifB; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.415
OOV08243.1
Bacterioferritin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.405
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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