Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
OOV05824.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)    
Predicted Functional Partners:
RF819_03060
AraC family transcriptional regulator; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.776
OOV05825.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
OOV05826.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
OOV05827.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.723
OOV05828.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.649
OOV05829.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.649
OOV05830.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.649
OOV08865.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.649
OOV05831.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.536
OOV08321.1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.480
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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