Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OOV05883.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)    
Predicted Functional Partners:
OOV05884.1
RNA-binding transcriptional accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.779
OOV07958.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
OOV09289.1
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.683
OOV06849.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.656
OOV08298.1
EAL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.617
OOV08780.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.596
OOV07586.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
   0.582
OOV08789.1
Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.536
OOV05675.1
Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.472
OOV05886.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.467
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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