Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOV06076.1Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)    
Predicted Functional Partners:
OOV06077.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
OOV05668.1
Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.938
OOV06081.1
Carotenoid 1,2-hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.923
OOV06075.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.893
OOV06071.1
Photosynthetic reaction center subunit H; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.852
OOV06073.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.846
OOV06065.1
2-vinyl bacteriochlorophyllide hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.844
OOV06072.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.837
OOV08890.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.815
bchN
Ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
  
 0.812
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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