STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOV06094.1Geranylgeranyl pyrophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family. (301 aa)    
Predicted Functional Partners:
OOV06060.1
Geranylgeranyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.955
OOV06093.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.919
OOV06077.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.912
OOV06092.1
Chlorophyll synthesis pathway protein BchC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.880
OOV05474.1
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.879
OOV06089.1
Chlorophyllide a reductase subunit Z; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.860
OOV06081.1
Carotenoid 1,2-hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.851
OOV05668.1
Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.850
OOV06090.1
Chlorophyllide a reductase subunit Y; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.843
OOV06062.1
Bacteriochlorophyll/chlorophyll a synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.815
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.