STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOV06268.1Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)    
Predicted Functional Partners:
lysS
lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.646
OOV06793.1
Fructose-1,6-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
      0.624
OOV08662.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.556
OOV08513.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.555
OOV06267.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.548
OOV06269.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.512
OOV07827.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.504
OOV08423.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.471
OOV07040.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.467
OOV08152.1
Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.427
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.