STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOV06619.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1812 aa)    
Predicted Functional Partners:
OOV06618.1
Peptidase C14; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.723
OOV06620.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.648
OOV07096.1
Nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
nhaA
Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
   
    0.615
OOV07095.1
Zinc peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.525
OOV07757.1
PEP-CTERM sorting domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.454
OOV07190.1
TRAP transporter small permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.453
OOV06489.1
DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.416
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.