STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOV07009.1SET domain-containing protein-lysine N-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)    
Predicted Functional Partners:
atpD
F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 0.965
OOV07785.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.965
RF819_00315
N-6 DNA methylase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.944
OOV07422.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.901
OOV07954.1
Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.883
OOV06715.1
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.865
dnaJ
Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...]
    
 0.865
OOV08374.1
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.865
OOV05484.1
Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.859
OOV06498.1
Acetylpolyamine amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.859
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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