STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOV07233.1HlyD family secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)    
Predicted Functional Partners:
emrB
Multidrug MFS transporte; with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.
 
 0.985
OOV07234.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.963
OOV06510.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.843
OOV07910.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.841
OOV05913.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.834
OOV08362.1
Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.821
OOV08659.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.821
OOV08389.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.810
OOV06600.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.808
OOV06122.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.806
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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