STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOV07553.1FmdB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (83 aa)    
Predicted Functional Partners:
OOV07554.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family.
 
     0.891
OOV07557.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.879
OOV07530.1
SIR2 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.780
OOV07556.1
NAD(+) ADP-ribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
OOV09118.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.775
OOV07524.1
Nitrogen fixation protein NifZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.775
cowN
Hypothetical protein; Is required to sustain N(2)-dependent growth in the presence of low levels of carbon monoxide (CO). Probably acts by protecting the N(2) fixation ability of the nitrogenase complex, which is inactivated in the presence of CO.
       0.773
OOV07522.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
OOV07571.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.769
OOV07527.1
Putative nitrogen fixation protein NifT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.751
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.