STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOV07759.1Paraslipin; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)    
Predicted Functional Partners:
ftsH
Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.967
OOV09157.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.938
OOV09153.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.616
OOV08582.1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.615
OOV07799.1
HflC protein; HflC and HflK could regulate a protease.
  
   
 0.611
OOV06206.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.607
OOV08583.1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M16 family.
  
 0.604
OOV07760.1
Lysine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.565
OOV07427.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.559
udk
Uridine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.557
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.