STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOV09212.1Aspartate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)    
Predicted Functional Partners:
OOV08844.1
L-asparaginase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.930
pyrB
Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.917
OOV05925.1
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
     
 0.910
aspA
Aspartate ammonia-lyase; Catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.875
OOV08097.1
Beta-aspartyl-peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.867
OOV06549.1
Aspartate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.860
OOV08102.1
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.824
OOV08103.1
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.813
OOV09178.1
Aspartate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.797
OOV07297.1
Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.788
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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