STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOV09232.1Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (255 aa)    
Predicted Functional Partners:
OOV07994.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.888
OOV06165.1
Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.860
OOV07884.1
Aromatic amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.830
RF819_17595
Cobyric acid synthase CobQ; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.828
OOV06509.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.810
OOV07995.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.810
hisC-2
Histidinol-phosphate transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.804
OOV11100.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.795
OOV06219.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.795
OOV06737.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.795
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.