Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOV08625.1GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)    
Predicted Functional Partners:
OOV06977.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.955
OOV08902.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.927
OOV06738.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.927
OOV08626.1
Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.895
OOV05916.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.890
OOV07183.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.882
OOV07607.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.872
OOV06509.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.851
OOV07995.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.851
OOV06219.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.847
Your Current Organism:
Rhodoferax fermentans
NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2
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