OOV09329.1 protein (Rhodoferax fermentans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

OOV09329.1

ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (325 aa)

Predicted Functional Partners:

OOV08704.1

0.981

OOV07487.1

0.965

OOV08104.1

0.962

OOV08705.1

0.960

OOV08080.1

0.951

OOV06431.1

0.941

OOV06433.1

0.909

OOV07486.1

0.909

OOV08082.1

0.909

OOV08105.1

0.905

Your Current Organism:

Rhodoferax fermentans

NCBI taxonomy Id: 28066
Other names: ATCC 49787, DSM 10138, IFO 16659, JCM 7819, NBRC 16659, R. fermentans, strain FR2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OOV06431.1	OOV06433.1	RF819_06530	RF819_06540	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
OOV06431.1	OOV07486.1	RF819_06530	RF819_12785	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
OOV06431.1	OOV07487.1	RF819_06530	RF819_12790	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
OOV06431.1	OOV08082.1	RF819_06530	RF819_16360	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.854
OOV06431.1	OOV08104.1	RF819_06530	RF819_16480	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
OOV06431.1	OOV08105.1	RF819_06530	RF819_16485	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
OOV06431.1	OOV08704.1	RF819_06530	RF819_20180	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
OOV06431.1	OOV08705.1	RF819_06530	RF819_20185	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
OOV06431.1	OOV09329.1	RF819_06530	RF819_20175	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.941
OOV06433.1	OOV06431.1	RF819_06540	RF819_06530	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
OOV06433.1	OOV07487.1	RF819_06540	RF819_12790	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
OOV06433.1	OOV08080.1	RF819_06540	RF819_16350	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
OOV06433.1	OOV08082.1	RF819_06540	RF819_16360	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
OOV06433.1	OOV08104.1	RF819_06540	RF819_16480	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
OOV06433.1	OOV08705.1	RF819_06540	RF819_20185	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
OOV06433.1	OOV09329.1	RF819_06540	RF819_20175	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.909
OOV07486.1	OOV06431.1	RF819_12785	RF819_06530	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
OOV07486.1	OOV07487.1	RF819_12785	RF819_12790	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
OOV07486.1	OOV08080.1	RF819_12785	RF819_16350	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
OOV07486.1	OOV08082.1	RF819_12785	RF819_16360	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454

page 1 of 5

Server load: medium (76%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About