STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYME_CMC036CSimilar to ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (547 aa)    
Predicted Functional Partners:
CYME_CMT432C
Similar to charged amino acid rich leucine zipper factor-1.
   
  0.997
CYME_CMH131C
Similar to basal transcription factor ABT1.
   
 
 0.984
CYME_CMT453C
Similar to nucleolar RNA-associated protein NRAP.
   
  0.984
CYME_CMF157C
Probable U3 snoRNP component Utp7p.
   
 0.969
CYME_CMH057C
Uncharacterized protein.
   
 
 0.961
CYME_CMC063C
Probable ribosome biogenesis protein NEP1.
   
 0.958
CYME_CMO023C
Similar to rRNA biogenesis protein rrp5 homolog multiple S1 rna binding domain protein.
   
 0.958
CYME_CMK083C
DEAD box protein; Belongs to the DEAD box helicase family.
  
 
0.949
CYME_CMP203C
CBF domain-containing protein.
   
 0.947
CYME_CMR456C
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.946
Your Current Organism:
Cyanidioschyzon merolae
NCBI taxonomy Id: 280699
Other names: C. merolae strain 10D, Cyanidioschyzon merolae strain 10D
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.