STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYME_CMK022CSimilar to Sm protein B. (80 aa)    
Predicted Functional Partners:
CYME_CMQ171C
Sm protein F.
   
 0.999
CYME_CMO342C
Similar to Sm protein G.
   
 0.999
CYME_CMN302C
Similar to Sm protein D2.
   
 0.999
CYME_CMF084C
Sm protein D1.
   
 0.999
CYME_CMM065C
Sm protein D3.
   
 0.999
CYME_CMK208C
Similar to U5 snRNP-specific protein.
   
 0.994
CYME_CML192C
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 0.992
CYME_CMT357C
Similar to splicing factor 3b subunit 2, 145kD.
   
 0.992
CYME_CME063C
Similar to splicing factor 3b subunit 4.
    
 0.992
CYME_CML103C
Similar to splicing factor 3b subunit 3.
    
 0.991
Your Current Organism:
Cyanidioschyzon merolae
NCBI taxonomy Id: 280699
Other names: C. merolae strain 10D, Cyanidioschyzon merolae strain 10D
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.