STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYME_CML138CSimilar to farnesyltransferase alpha subunit. (213 aa)    
Predicted Functional Partners:
CYME_CMS122C
Probable farnesyl-protein transferase beta-subunit.
    
 0.999
CYME_CMM269C
Farnesyl-diphosphate synthetase; Belongs to the FPP/GGPP synthase family.
     
 0.939
CYME_CMB126C
Dehydrodolichyl diphosphate synthase.
     
 0.928
CYME_CMJ246C
Trans-prenyltransferase; Belongs to the FPP/GGPP synthase family.
     
 0.916
CYME_CMK058C
Geranylgeranyl diphosphate synthase, chloroplast; Belongs to the FPP/GGPP synthase family.
     
 0.916
CYME_CMT239C
Similar to palmitoyl-protein thioesterase.
     
  0.900
CYME_CMG178C
Squalene synthase.
     
 0.837
CYME_CMM166C
Phytoene synthase.
     
 0.837
CYME_CMT371C
Small GTP-binding protein of Ras family.
    
 0.627
CYME_CMO219C
Insulysin; Belongs to the peptidase M16 family.
      
 0.414
Your Current Organism:
Cyanidioschyzon merolae
NCBI taxonomy Id: 280699
Other names: C. merolae strain 10D, Cyanidioschyzon merolae strain 10D
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