CYME_CMG133C protein (Cyanidioschyzon merolae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CYME_CMG133C

Excinuclease ABC subunit B. (905 aa)

Predicted Functional Partners:

CYME_CMM003C

0.851

CYME_CMJ286C

0.741

CYME_CMT030C

0.730

CYME_CMC064C

0.702

CYME_CMN050C

0.700

CYME_CMT154C

0.686

CYME_CMH058C

0.667

CYME_CMS428C

0.662

CYME_CMK285C

0.654

CYME_CML058C

0.632

Your Current Organism:

Cyanidioschyzon merolae

NCBI taxonomy Id: 280699
Other names: C. merolae strain 10D, Cyanidioschyzon merolae strain 10D

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYME_CMC064C	CYME_CMG133C	M1VEQ5	M1V7B4	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Excinuclease ABC subunit B.	0.702
CYME_CMC064C	CYME_CMH058C	M1VEQ5	M1V7G7	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation initiation factor eIF-5.	0.998
CYME_CMC064C	CYME_CMJ286C	M1VEQ5	M1VHK4	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Polyadenylate-binding protein.	0.552
CYME_CMC064C	CYME_CMK285C	M1VEQ5	M1V5G4	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.999
CYME_CMC064C	CYME_CMM003C	M1VEQ5	M1V8T1	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation elongation factor 1 gamma.	0.914
CYME_CMC064C	CYME_CMN050C	M1VEQ5	M1V942	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation initiation factor eIF-4E; Belongs to the eukaryotic initiation factor 4E family.	0.503
CYME_CMC064C	CYME_CMS428C	M1VEQ5	A0A125YKY8	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation elongation factor 2.	0.562
CYME_CMC064C	CYME_CMT030C	M1VEQ5	M1V7F9	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.982
CYME_CMC064C	CYME_CMT154C	M1VEQ5	M1VCD4	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.957
CYME_CMG133C	CYME_CMC064C	M1V7B4	M1VEQ5	Excinuclease ABC subunit B.	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.702
CYME_CMG133C	CYME_CMH058C	M1V7B4	M1V7G7	Excinuclease ABC subunit B.	Eukaryotic translation initiation factor eIF-5.	0.667
CYME_CMG133C	CYME_CMJ286C	M1V7B4	M1VHK4	Excinuclease ABC subunit B.	Polyadenylate-binding protein.	0.741
CYME_CMG133C	CYME_CMK285C	M1V7B4	M1V5G4	Excinuclease ABC subunit B.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.654
CYME_CMG133C	CYME_CML058C	M1V7B4	M1USK3	Excinuclease ABC subunit B.	Excinuclease ABC subunit C.	0.632
CYME_CMG133C	CYME_CMM003C	M1V7B4	M1V8T1	Excinuclease ABC subunit B.	Eukaryotic translation elongation factor 1 gamma.	0.851
CYME_CMG133C	CYME_CMN050C	M1V7B4	M1V942	Excinuclease ABC subunit B.	Eukaryotic translation initiation factor eIF-4E; Belongs to the eukaryotic initiation factor 4E family.	0.700
CYME_CMG133C	CYME_CMS428C	M1V7B4	A0A125YKY8	Excinuclease ABC subunit B.	Eukaryotic translation elongation factor 2.	0.662
CYME_CMG133C	CYME_CMT030C	M1V7B4	M1V7F9	Excinuclease ABC subunit B.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.730
CYME_CMG133C	CYME_CMT154C	M1V7B4	M1VCD4	Excinuclease ABC subunit B.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.686
CYME_CMH058C	CYME_CMC064C	M1V7G7	M1VEQ5	Eukaryotic translation initiation factor eIF-5.	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.998