STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYME_CMT375CUncharacterized protein. (552 aa)    
Predicted Functional Partners:
CYME_CML140C
RNA helicase.
   
 
 0.992
CYME_CMM070C
Probable mRNA-decapping enzyme complex component DCP1.
    
 
 0.845
CYME_CMQ215C
Chromodomain helicase DNA binding protein CHD.
   
 
 0.737
CYME_CMD046C
FHA domain-containing protein.
   
 
 0.737
CYME_CMJ115C
NTP_transf_9 domain-containing protein.
    
 
 0.704
CYME_CMJ226C
mRNA-decapping enzyme complex component DCP2.
    
 
 0.704
CYME_CMJ286C
Polyadenylate-binding protein.
    
 
 0.632
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 
 0.567
CYME_CMK086C
Uncharacterized protein.
    
 
 0.518
CYME_CMD031C
Probable arginine methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.
    
 
 0.497
Your Current Organism:
Cyanidioschyzon merolae
NCBI taxonomy Id: 280699
Other names: C. merolae strain 10D, Cyanidioschyzon merolae strain 10D
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