STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYME_CMJ244CUncharacterized protein. (1003 aa)    
Predicted Functional Partners:
CYME_CMO114C
Uncharacterized protein.
    
 0.839
CYME_CMJ200C
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a.
    
 0.839
CYME_CMQ363C
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a.
    
 0.839
CYME_CMR360C
Probable DNA polymerase epsilon, subunit C.
    
 
 0.828
CYME_CMB002C
Probable splicing factor 3b subunit 1.
   
 0.691
CYME_CMO092C
DNA repair and recombination protein RAD26.
    
 0.655
CYME_CMM055C
SAP domain-containing protein.
    
 0.634
CYME_CMN166C
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.606
CYME_CMR457C
Histone H2A; Belongs to the histone H2A family.
    
 0.571
CYME_CMQ215C
Chromodomain helicase DNA binding protein CHD.
   
 0.542
Your Current Organism:
Cyanidioschyzon merolae
NCBI taxonomy Id: 280699
Other names: C. merolae strain 10D, Cyanidioschyzon merolae strain 10D
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.