STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYME_CMO092CDNA repair and recombination protein RAD26. (917 aa)    
Predicted Functional Partners:
CYME_CMS236C
Probable excision repair protein ERCC5.
   
 0.984
CYME_CMG169C
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.966
CYME_CMB030C
WD_REPEATS_REGION domain-containing protein.
    
 0.965
CYME_CMT501C
Probable transcription elongation factor S-II.
    
 0.941
CYME_CMT583C
RNA polymerase II subunit.
    
 0.920
CYME_CMR224C
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.903
CYME_CMR264C
UV-damaged DNA binding protein.
    
 0.902
CYME_CMP043C
RNA polymerase II third large subunit.
   
  0.887
CYME_CMH017C
RNA polymerase I, II, III common subunit.
    
 0.886
CYME_CMD026C
RNA polymerase II subunit G.
    
 0.886
Your Current Organism:
Cyanidioschyzon merolae
NCBI taxonomy Id: 280699
Other names: C. merolae strain 10D, Cyanidioschyzon merolae strain 10D
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