STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYME_CME063CSimilar to splicing factor 3b subunit 4. (132 aa)    
Predicted Functional Partners:
CYME_CML103C
Similar to splicing factor 3b subunit 3.
   
 0.999
CYME_CMT357C
Similar to splicing factor 3b subunit 2, 145kD.
   
 0.999
CYME_CMB002C
Probable splicing factor 3b subunit 1.
    
 0.998
CYME_CMS014C
Uncharacterized protein.
    
 0.994
CYME_CMQ406C
Similar to splicing factor 3a, subunit 3.
    
 0.993
CYME_CMK022C
Similar to Sm protein B.
    
 0.992
CYME_CML192C
U5 small nuclear ribonucleoprotein 200 kDa helicase.
    
 
 0.987
CYME_CMS438C
Similar to pre-mRNA splicing factor U2AF large chain.
   
 
 0.987
CYME_CMH168C
Pre-mRNA splicing factor PRP8.
    
 
 0.984
CYME_CMK208C
Similar to U5 snRNP-specific protein.
   
 
 0.928
Your Current Organism:
Cyanidioschyzon merolae
NCBI taxonomy Id: 280699
Other names: C. merolae strain 10D, Cyanidioschyzon merolae strain 10D
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.