CYME_CMI167C protein (Cyanidioschyzon merolae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CYME_CMI167C

Uncharacterized protein. (206 aa)

Predicted Functional Partners:

CYME_CMJ088C

0.508

rps14

0.500

CYME_CMJ005C

0.495

CYME_CMK274C

0.491

rps12

0.471

CYME_CMM325C

0.469

CYME_CMK275C

0.463

CYME_CMF095C

0.456

CYME_CMQ156C

0.456

CYME_CMR112C

0.442

Your Current Organism:

Cyanidioschyzon merolae

NCBI taxonomy Id: 280699
Other names: C. merolae strain 10D, Cyanidioschyzon merolae strain 10D

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYME_CMF095C	CYME_CMI167C	M1UPT6	M1VGZ3	TATA-box binding protein.	Uncharacterized protein.	0.456
CYME_CMF095C	CYME_CMM325C	M1UPT6	M1V923	TATA-box binding protein.	Similar to RNA polymerase III transcription factor TFIIIC.	0.784
CYME_CMI167C	CYME_CMF095C	M1VGZ3	M1UPT6	Uncharacterized protein.	TATA-box binding protein.	0.456
CYME_CMI167C	CYME_CMJ005C	M1VGZ3	M1VH58	Uncharacterized protein.	Similar to cell surface glycoprotein.	0.495
CYME_CMI167C	CYME_CMJ088C	M1VGZ3	M1V584	Uncharacterized protein.	Uncharacterized protein.	0.508
CYME_CMI167C	CYME_CMK274C	M1VGZ3	M1USF2	Uncharacterized protein.	Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.491
CYME_CMI167C	CYME_CMK275C	M1VGZ3	M1VD39	Uncharacterized protein.	BTB domain-containing protein.	0.463
CYME_CMI167C	CYME_CMM325C	M1VGZ3	M1V923	Uncharacterized protein.	Similar to RNA polymerase III transcription factor TFIIIC.	0.469
CYME_CMI167C	CYME_CMQ156C	M1VGZ3	M1V6C0	Uncharacterized protein.	Similar to Polycomb-group developmental gene, enhancer of zeste.	0.456
CYME_CMI167C	CYME_CMR112C	M1VGZ3	M1V6Q1	Uncharacterized protein.	GP-PDE domain-containing protein.	0.442
CYME_CMI167C	rps12	M1VGZ3	Q85FT9	Uncharacterized protein.	30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity).	0.471
CYME_CMI167C	rps14	M1VGZ3	Q85FY5	Uncharacterized protein.	30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.	0.500
CYME_CMJ005C	CYME_CMI167C	M1VH58	M1VGZ3	Similar to cell surface glycoprotein.	Uncharacterized protein.	0.495
CYME_CMJ005C	CYME_CMR112C	M1VH58	M1V6Q1	Similar to cell surface glycoprotein.	GP-PDE domain-containing protein.	0.692
CYME_CMJ088C	CYME_CMI167C	M1V584	M1VGZ3	Uncharacterized protein.	Uncharacterized protein.	0.508
CYME_CMJ088C	CYME_CMK274C	M1V584	M1USF2	Uncharacterized protein.	Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
CYME_CMJ088C	rps12	M1V584	Q85FT9	Uncharacterized protein.	30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity).	0.999
CYME_CMJ088C	rps14	M1V584	Q85FY5	Uncharacterized protein.	30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.	0.999
CYME_CMK274C	CYME_CMI167C	M1USF2	M1VGZ3	Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.491
CYME_CMK274C	CYME_CMJ088C	M1USF2	M1V584	Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999