STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYME_CMN338CNADPH:protochlorophyllide oxidoreductase, chloroplast. (403 aa)    
Predicted Functional Partners:
CYME_CMT220C
Chlorophyll a synthase.
   
  0.906
acsF
Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME).
    
 0.902
CYME_CMD190C
NADPH:protochlorophyllide oxidoreductase.
  
  
 
0.900
CYME_CMG217C
NADPH:protochlorophyllide oxidoreductase.
  
  
 
0.900
moeB
Molybdopterin biosynthesis MoeB protein.
   
 
 0.637
dnaB
Replicative DNA helicase.
   
 
 0.623
ilvB
Acetolactate synthase.
   
 0.569
infB
Initiation factor 2.
    
 
 0.561
ilvH
Acetolactate synthase small subunit.
      
 0.547
ftsH
ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase. In the central section; belongs to the AAA ATPase family.
   
 
 0.540
Your Current Organism:
Cyanidioschyzon merolae
NCBI taxonomy Id: 280699
Other names: C. merolae strain 10D, Cyanidioschyzon merolae strain 10D
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