Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY46867.1 | AFY46868.1 | Nos7524_0969 | Nos7524_0970 | Hypothetical protein. | Hypothetical protein; Manually curated; non-canonical start codon. | 0.775 |
AFY46867.1 | AFY46871.1 | Nos7524_0969 | Nos7524_0973 | Hypothetical protein. | Hypothetical protein. | 0.615 |
AFY46867.1 | ureE | Nos7524_0969 | Nos7524_0972 | Hypothetical protein. | Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.615 |
AFY46867.1 | ureF | Nos7524_0969 | Nos7524_0971 | Hypothetical protein. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.615 |
AFY46867.1 | ureG | Nos7524_0969 | Nos7524_0968 | Hypothetical protein. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.746 |
AFY46868.1 | AFY46867.1 | Nos7524_0970 | Nos7524_0969 | Hypothetical protein; Manually curated; non-canonical start codon. | Hypothetical protein. | 0.775 |
AFY46868.1 | AFY46871.1 | Nos7524_0970 | Nos7524_0973 | Hypothetical protein; Manually curated; non-canonical start codon. | Hypothetical protein. | 0.615 |
AFY46868.1 | ureE | Nos7524_0970 | Nos7524_0972 | Hypothetical protein; Manually curated; non-canonical start codon. | Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.615 |
AFY46868.1 | ureF | Nos7524_0970 | Nos7524_0971 | Hypothetical protein; Manually curated; non-canonical start codon. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.615 |
AFY46868.1 | ureG | Nos7524_0970 | Nos7524_0968 | Hypothetical protein; Manually curated; non-canonical start codon. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.746 |
AFY46871.1 | AFY46867.1 | Nos7524_0973 | Nos7524_0969 | Hypothetical protein. | Hypothetical protein. | 0.615 |
AFY46871.1 | AFY46868.1 | Nos7524_0973 | Nos7524_0970 | Hypothetical protein. | Hypothetical protein; Manually curated; non-canonical start codon. | 0.615 |
AFY46871.1 | ureE | Nos7524_0973 | Nos7524_0972 | Hypothetical protein. | Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.773 |
AFY46871.1 | ureF | Nos7524_0973 | Nos7524_0971 | Hypothetical protein. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.773 |
AFY46871.1 | ureG | Nos7524_0973 | Nos7524_0968 | Hypothetical protein. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.595 |
AFY47051.1 | ureA | Nos7524_1160 | Nos7524_1594 | Hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB. | PFAM: Urease, gamma subunit; TIGRFAM: urease, gamma subunit; Belongs to the urease gamma subunit family. | 0.763 |
AFY47051.1 | ureB | Nos7524_1160 | Nos7524_1595 | Hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB. | PFAM: Urease beta subunit; TIGRFAM: urease, beta subunit; Belongs to the urease beta subunit family. | 0.680 |
AFY47051.1 | ureC | Nos7524_1160 | Nos7524_1597 | Hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB. | Urease, alpha subunit; PFAM: Amidohydrolase family; Urease alpha-subunit, N-terminal domain; TIGRFAM: urease, alpha subunit. | 0.765 |
AFY47051.1 | ureD | Nos7524_1160 | Nos7524_1593 | Hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB. | Urease accessory protein UreH; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.812 |
AFY47051.1 | ureE | Nos7524_1160 | Nos7524_0972 | Hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB. | Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.870 |
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