STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY48857.1TIGR00297 family protein; PFAM: Integral membrane protein DUF92; TIGRFAM: TIGR00297 family protein. (265 aa)    
Predicted Functional Partners:
AFY49445.1
Putative integral membrane protein; PFAM: YGGT family.
  
     0.723
AFY49369.1
PFAM: Manganese-stabilising protein / photosystem II polypeptide.
  
     0.709
AFY50457.1
Phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase.
  
     0.687
AFY47907.1
PFAM: Protein of unknown function (DUF3593).
  
     0.681
AFY47662.1
Hypothetical protein.
  
     0.672
AFY47908.1
PFAM: Protein of unknown function (DUF2499).
  
     0.653
AFY50335.1
Carotene 7,8-desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
     0.652
AFY49355.1
Putative photosystem II stability/assembly factor-like protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.
  
     0.650
AFY46862.1
PFAM: Protein of unknown function (DUF1350).
  
     0.646
psb28
PFAM: Psb28 protein; TIGRFAM: photosystem II reaction center protein Psb28; Belongs to the Psb28 family.
  
     0.645
Your Current Organism:
Nostoc sp. PCC7524
NCBI taxonomy Id: 28072
Other names: N. sp. PCC 7524, NOSTOC SP. (STRAIN PCC 7524), Nostoc ATCC 29411, Nostoc ATCC29411, Nostoc PCC 7524, Nostoc PCC7524, Nostoc sp. (ATCC 29411), Nostoc sp. (PCC 7524), Nostoc sp. ATCC 29411, Nostoc sp. ATCC29411, Nostoc sp. PCC 7524
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