STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY49024.1PFAM: BNR/Asp-box repeat. (448 aa)    
Predicted Functional Partners:
AFY49025.1
Hypothetical protein.
     0.903
AFY49023.1
Hypothetical protein.
       0.773
AFY49022.1
Microcystin-dependent protein; PFAM: Phage Tail Collar Domain.
       0.760
AFY49021.1
Hypothetical protein.
       0.690
AFY49019.1
Group I intron endonuclease; PFAM: NUMOD3 motif; GIY-YIG catalytic domain; TIGRFAM: group I intron endonuclease.
       0.587
AFY49020.1
PFAM: Phage tail protein (Tail_P2_I); TIGRFAM: phage tail protein, P2 protein I family.
       0.587
AFY46257.1
Beta-1,4-xylanase; PFAM: Glycosyl hydrolase family 10.
  
     0.551
AFY49018.1
PFAM: Baseplate J-like protein.
       0.540
AFY49017.1
PFAM: Gene 25-like lysozyme.
       0.536
AFY49208.1
PFAM: Terpene synthase family, metal binding domain.
  
     0.536
Your Current Organism:
Nostoc sp. PCC7524
NCBI taxonomy Id: 28072
Other names: N. sp. PCC 7524, NOSTOC SP. (STRAIN PCC 7524), Nostoc ATCC 29411, Nostoc ATCC29411, Nostoc PCC 7524, Nostoc PCC7524, Nostoc sp. (ATCC 29411), Nostoc sp. (PCC 7524), Nostoc sp. ATCC 29411, Nostoc sp. ATCC29411, Nostoc sp. PCC 7524
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