STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OQW29489.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0176 family. (254 aa)    
Predicted Functional Partners:
OQW29221.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.854
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.803
OQW29491.1
Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.803
OQW29488.1
Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.537
OQW29492.1
Phosphate starvation-inducible protein PhoH; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
OQW29493.1
Guanosine monophosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
OQW29050.1
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.442
Your Current Organism:
Legionella anisa
NCBI taxonomy Id: 28082
Other names: ATCC 35292, ATCC:35292D-5, CCUG 29665, CIP 103870, DSM 17627, JCM 7573, L. anisa, NCTC 11974, strain WA-316-C3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.