Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lbir_0236 | Lbir_0237 | Lbir_0236 | Lbir_0237 | Membrane protein. | Tfp pilus assembly, pilus retraction ATPase PilT. | 0.954 |
Lbir_0236 | Lbir_0238 | Lbir_0236 | Lbir_0238 | Membrane protein. | TraU protein. | 0.954 |
Lbir_0236 | Lbir_0239 | Lbir_0236 | Lbir_0239 | Membrane protein. | F pilus assembly Type-IV secretion system for plasmid transfer. | 0.954 |
Lbir_0236 | Lbir_0240 | Lbir_0236 | Lbir_0240 | Membrane protein. | Hypothetical protein. | 0.954 |
Lbir_0236 | Lbir_0241 | Lbir_0236 | Lbir_0241 | Membrane protein. | Membrane protein. | 0.954 |
Lbir_0236 | Lbir_0242 | Lbir_0236 | Lbir_0242 | Membrane protein. | Hypothetical protein. | 0.954 |
Lbir_0236 | Lbir_0248 | Lbir_0236 | Lbir_0248 | Membrane protein. | Hypothetical protein. | 0.952 |
Lbir_0236 | Lbir_0249 | Lbir_0236 | Lbir_0249 | Membrane protein. | Hypothetical protein. | 0.952 |
Lbir_0236 | Lbir_0250 | Lbir_0236 | Lbir_0250 | Membrane protein. | Bile acid beta-glucosidase. | 0.952 |
Lbir_0237 | Lbir_0236 | Lbir_0237 | Lbir_0236 | Tfp pilus assembly, pilus retraction ATPase PilT. | Membrane protein. | 0.954 |
Lbir_0237 | Lbir_0238 | Lbir_0237 | Lbir_0238 | Tfp pilus assembly, pilus retraction ATPase PilT. | TraU protein. | 0.954 |
Lbir_0237 | Lbir_0239 | Lbir_0237 | Lbir_0239 | Tfp pilus assembly, pilus retraction ATPase PilT. | F pilus assembly Type-IV secretion system for plasmid transfer. | 0.958 |
Lbir_0237 | Lbir_0240 | Lbir_0237 | Lbir_0240 | Tfp pilus assembly, pilus retraction ATPase PilT. | Hypothetical protein. | 0.954 |
Lbir_0237 | Lbir_0241 | Lbir_0237 | Lbir_0241 | Tfp pilus assembly, pilus retraction ATPase PilT. | Membrane protein. | 0.954 |
Lbir_0237 | Lbir_0242 | Lbir_0237 | Lbir_0242 | Tfp pilus assembly, pilus retraction ATPase PilT. | Hypothetical protein. | 0.954 |
Lbir_0237 | Lbir_0248 | Lbir_0237 | Lbir_0248 | Tfp pilus assembly, pilus retraction ATPase PilT. | Hypothetical protein. | 0.952 |
Lbir_0237 | Lbir_0249 | Lbir_0237 | Lbir_0249 | Tfp pilus assembly, pilus retraction ATPase PilT. | Hypothetical protein. | 0.952 |
Lbir_0237 | Lbir_0250 | Lbir_0237 | Lbir_0250 | Tfp pilus assembly, pilus retraction ATPase PilT. | Bile acid beta-glucosidase. | 0.952 |
Lbir_0238 | Lbir_0236 | Lbir_0238 | Lbir_0236 | TraU protein. | Membrane protein. | 0.954 |
Lbir_0238 | Lbir_0237 | Lbir_0238 | Lbir_0237 | TraU protein. | Tfp pilus assembly, pilus retraction ATPase PilT. | 0.954 |
page 1 of 5