STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbir_0250Bile acid beta-glucosidase. (279 aa)    
Predicted Functional Partners:
rir1
Ribonucleotide-diphosphate reductase subunit alpha; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
 0.979
Lbir_0248
Hypothetical protein.
 
     0.954
Lbir_0249
Hypothetical protein.
 
     0.954
Lbir_0236
Membrane protein.
 
     0.952
Lbir_0237
Tfp pilus assembly, pilus retraction ATPase PilT.
 
     0.952
Lbir_0238
TraU protein.
 
     0.952
Lbir_0239
F pilus assembly Type-IV secretion system for plasmid transfer.
 
     0.952
Lbir_0240
Hypothetical protein.
 
     0.952
Lbir_0241
Membrane protein.
 
     0.952
Lbir_0242
Hypothetical protein.
 
     0.952
Your Current Organism:
Legionella birminghamensis
NCBI taxonomy Id: 28083
Other names: ATCC 43702, CCUG 31233, CCUG 31233 A, CIP 103871, DSM 19232, JCM 7559, L. birminghamensis, NCTC 12437
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