STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbir_0277Hypothetical protein. (230 aa)    
Predicted Functional Partners:
traI_1
TraI protein.
  
     0.703
trbJ_1
Conjugal transfer protein TrbJ.
  
     0.694
traJ_1
Conjugal transfer relaxosome component TraJ.
  
     0.681
trbJ_2
Conjugal transfer protein TrbJ.
  
     0.672
Lbir_3053
Coiled-coil protein.
  
     0.670
secA_4
Coiled-coil protein.
  
     0.657
traI_2
TraI protein.
  
     0.651
trbL_1
Conjugal transfer protein TrbL.
  
     0.635
Lbir_0280
Hypothetical protein.
 
     0.634
traJ_2
Conjugal transfer relaxosome component TraJ.
  
     0.631
Your Current Organism:
Legionella birminghamensis
NCBI taxonomy Id: 28083
Other names: ATCC 43702, CCUG 31233, CCUG 31233 A, CIP 103871, DSM 19232, JCM 7559, L. birminghamensis, NCTC 12437
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.