Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lbir_0644 | hoxH | Lbir_0644 | Lbir_0641 | Hydrogenase subunit. | Coenzyme F420-reducing hydrogenase, alpha subunit. | 0.985 |
Lbir_0644 | hoxY | Lbir_0644 | Lbir_0642 | Hydrogenase subunit. | Sulfhydrogenase subunit delta. | 0.985 |
Lbir_0644 | hydG_1 | Lbir_0644 | Lbir_0643 | Hydrogenase subunit. | Hydrogenase/sulfur reductase gamma subunit. | 0.997 |
Lbir_0644 | hypA | Lbir_0644 | Lbir_0650 | Hydrogenase subunit. | Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.674 |
Lbir_0644 | hypB | Lbir_0644 | Lbir_0649 | Hydrogenase subunit. | Hydrogenase expression/formation protein HypB. | 0.708 |
Lbir_0644 | hypC | Lbir_0644 | Lbir_0647 | Hydrogenase subunit. | Hydrogenase expression/formation protein HypC. | 0.782 |
Lbir_0644 | hypD | Lbir_0644 | Lbir_0646 | Hydrogenase subunit. | Hydrogenase expression/formation protein HypD; Belongs to the HypD family. | 0.809 |
Lbir_0644 | hypE | Lbir_0644 | Lbir_0645 | Hydrogenase subunit. | Hydrogenase expression/formation protein HypE. | 0.831 |
Lbir_0644 | hypF | Lbir_0644 | Lbir_0648 | Hydrogenase subunit. | Hydrogenase maturation protein HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide. | 0.812 |
Lbir_0644 | vhtD | Lbir_0644 | Lbir_0640 | Hydrogenase subunit. | Hydrogenase expression/formation protein. | 0.965 |
hoxH | Lbir_0644 | Lbir_0641 | Lbir_0644 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase subunit. | 0.985 |
hoxH | hoxY | Lbir_0641 | Lbir_0642 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Sulfhydrogenase subunit delta. | 0.999 |
hoxH | hydG_1 | Lbir_0641 | Lbir_0643 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase/sulfur reductase gamma subunit. | 0.976 |
hoxH | hypA | Lbir_0641 | Lbir_0650 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.692 |
hoxH | hypB | Lbir_0641 | Lbir_0649 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase expression/formation protein HypB. | 0.709 |
hoxH | hypC | Lbir_0641 | Lbir_0647 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase expression/formation protein HypC. | 0.830 |
hoxH | hypD | Lbir_0641 | Lbir_0646 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase expression/formation protein HypD; Belongs to the HypD family. | 0.879 |
hoxH | hypE | Lbir_0641 | Lbir_0645 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase expression/formation protein HypE. | 0.875 |
hoxH | hypF | Lbir_0641 | Lbir_0648 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase maturation protein HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide. | 0.888 |
hoxH | vhtD | Lbir_0641 | Lbir_0640 | Coenzyme F420-reducing hydrogenase, alpha subunit. | Hydrogenase expression/formation protein. | 0.968 |
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