Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
capB | pyrE | Lbir_0706 | Lbir_0705 | Cold shock protein CapB. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.571 |
capB | rplI | Lbir_0706 | Lbir_2148 | Cold shock protein CapB. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.480 |
capB | rplS | Lbir_0706 | Lbir_3138 | Cold shock protein CapB. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.537 |
capB | rplT | Lbir_0706 | Lbir_1018 | Cold shock protein CapB. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.535 |
capB | rpmA | Lbir_0706 | Lbir_0793 | Cold shock protein CapB. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.529 |
capB | rpmE | Lbir_0706 | Lbir_1637 | Cold shock protein CapB. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.491 |
capB | rpoA | Lbir_0706 | Lbir_3177 | Cold shock protein CapB. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.518 |
capB | rpoB | Lbir_0706 | Lbir_3208 | Cold shock protein CapB. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.520 |
capB | rpoZ | Lbir_0706 | Lbir_1565 | Cold shock protein CapB. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.523 |
capB | rpsL | Lbir_0706 | Lbir_3206 | Cold shock protein CapB. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.561 |
pyrE | capB | Lbir_0705 | Lbir_0706 | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | Cold shock protein CapB. | 0.571 |
rplI | capB | Lbir_2148 | Lbir_0706 | 50S ribosomal protein L9; Binds to the 23S rRNA. | Cold shock protein CapB. | 0.480 |
rplI | rplS | Lbir_2148 | Lbir_3138 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.997 |
rplI | rplT | Lbir_2148 | Lbir_1018 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.997 |
rplI | rpmA | Lbir_2148 | Lbir_0793 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.997 |
rplI | rpmE | Lbir_2148 | Lbir_1637 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.972 |
rplI | rpoA | Lbir_2148 | Lbir_3177 | 50S ribosomal protein L9; Binds to the 23S rRNA. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.992 |
rplI | rpoB | Lbir_2148 | Lbir_3208 | 50S ribosomal protein L9; Binds to the 23S rRNA. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.978 |
rplI | rpoZ | Lbir_2148 | Lbir_1565 | 50S ribosomal protein L9; Binds to the 23S rRNA. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.857 |
rplI | rpsL | Lbir_2148 | Lbir_3206 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.994 |
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