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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dps_2Bacterioferritin (cytochrome b1). (181 aa)    
Predicted Functional Partners:
Lbir_0492
Transmembrane protein.
  
    0.861
yjbJ
Stress response protein; Belongs to the UPF0337 (CsbD) family.
  
    0.859
Lbir_2800
PRC-barrel domain protein.
   
  
 0.799
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.695
Lbir_2553
Protein with a Dodecin-like topology.
  
    0.678
cspC_2
Stress protein, member of the CspA-family.
  
    0.516
Lbir_1025
Hypothetical protein.
  
  
 0.484
dps_1
DNA binding stress protein; Belongs to the Dps family.
   
  
 0.481
cueO
Multicopper oxidase.
   
 
 0.474
copA_2-2
Multicopper oxidase.
   
 
 0.474
Your Current Organism:
Legionella birminghamensis
NCBI taxonomy Id: 28083
Other names: ATCC 43702, CCUG 31233, CCUG 31233 A, CIP 103871, DSM 19232, JCM 7559, L. birminghamensis, NCTC 12437
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