Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lbir_0807Hypothetical protein. (473 aa)    
Predicted Functional Partners:
arcB_2
Sensory box histidine kinase/response regulator.
  
 0.901
divK
Sensory box histidine kinase/response regulator.
  
 0.901
arcB_1
Sensory histidine-kinase / response regulator.
  
 0.901
arcB_6
Sensory histidine-kinase / response regulator.
  
 0.901
Lbir_1982
Sensory histidine-kinase / response regulator.
  
 0.901
arcB_3
Sensory histidine-kinase / response regulator.
  
 0.901
bvgS
Sensory histidine-kinase / response regulator.
  
 0.901
arcB_4
Sensory histidine-kinase / response regulator.
  
 0.901
Lbir_2622
Sensory box/GGDEF family protein.
   
 0.858
gmr_2
GGDEF domain-containing sensory box protein.
  
 0.834
Your Current Organism:
Legionella birminghamensis
NCBI taxonomy Id: 28083
Other names: ATCC 43702, CCUG 31233, CCUG 31233 A, CIP 103871, DSM 19232, JCM 7559, L. birminghamensis, NCTC 12437
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