STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbir_1024Ferritin-like domain protein; Belongs to the Dps family. (281 aa)    
Predicted Functional Partners:
Lbir_1025
Hypothetical protein.
       0.851
hydG_1
Hydrogenase/sulfur reductase gamma subunit.
    
 
 0.578
ascD
NAD(P)H-flavin reductase.
    
 
 0.578
hydG_2
Hydrogenase/sulfur reductase gamma subunit.
    
 
 0.578
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
       0.555
moeZ_3
Putative molybdenum cofactor synthesis protein 3.
     
  0.543
moeZ_2
Putative molybdenum cofactor synthesis protein 3.
     
  0.543
cphB_2
Cyanophycinase; Belongs to the peptidase S51 family.
       0.512
dps_2
Bacterioferritin (cytochrome b1).
     
 0.503
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.461
Your Current Organism:
Legionella birminghamensis
NCBI taxonomy Id: 28083
Other names: ATCC 43702, CCUG 31233, CCUG 31233 A, CIP 103871, DSM 19232, JCM 7559, L. birminghamensis, NCTC 12437
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